thirteen Will get: –logistic + sex covariate bugfix. –snp instead –windows not behaves such as for example –snp + “–windows 0” whenever other alternatives share the same bp complement. –pca today mistakes out in place of going back all the-zero eigenvalues/vectors whenever trials without genotype study can be found.
eleven Can get (beta step one): Timely third-party –logistic code integrated (pick credits web page to possess info). –output-chr extra. –family unit members and you may –make-perm-pheno observed. Within-cluster permutation bugfix. –linear/–logistic dominating/recessive activities and covariate interactions work today. –evaluation bugfix.
15 April: –bcf now adds step 1 so you’re able to variant coordinates, as their coordinates is laid out is 0-built when you are VCF was step one-centered.
fourteen April: –check-sex/–impute-gender no further gently takes into account nonmissing Y genotype matters by default. –bcf now snacks shed variation IDs as if these people were equal so you’re able to ‘.’, in lieu of erroring out.
8 April: Centimorgan updates loading bugfix. –mendel mistake malfunction formatting bugfix. –lambda bugfix. –to evolve today designs and logs estimated genomic handle lambda worth. –keep[-fam]/–remove[-fam] input documents having content IDs today https://datingranking.net/it/420-incontri/ just end up in an alert as an alternative regarding a mistake. –check-sex/–impute-gender now has an effective ‘y-only’ means.